Usage-Guide For PerlScripts

• Perl Scripts
  • MascotqueryParse.pl -manual usage:
    • c:> MascotqueryParse.pl <input.csv> <iTRAQ-Numerator> <iTRAQ-Denominator>
      • <input.csv> - F014964.csv
      • <iTRAQ-Numerator> - 114
      • <iTRAQ-Denominator> - 116
    • c:> MascotqueryParse.pl F014964.csv 114 116
  • ProteinCalculate.pl - manual usage:
    • c:> ProteinCalculate.pl <input.csv.protein.csv> <Peptide Normalization Factor>
      • <input.csv.protein.csv> - F014964.csv.Protein.csv
      • <Peptide Normalization Factor> - 1.12 (median value of peptide ratios)
    • c:> ProteinCalculate.pl FF014964.csv.Protein.csv 1.12