Department of Quantitative Health Sciences
Ming Hu, PhD
Lerner Research Institute
9500 Euclid Avenue
Cleveland, Ohio 44195
Phone: (216) 445-5057
Schmitt AD, Hu M* and Ren B*. (2016) Genome-wide mapping and analyses of chromosome architecture. Nature Reviews Molecular Cell Biology. In press. *Co-corresponding author.
Xu Z, Zhang G, Wu C, Li Y* and Hu M*. (2016) FastHiC: a fast algorithm to detect long-range chromosomal interactions from Hi-C data. Bioinformatics. In press. *Co-corresponding author.
Xu Z, Zhang G, Duan Q, Chai S, Zhang B, Wu C, Jin F, Feng Y, Li Y* and Hu M*. (2016) HiView: an integrative genome browser to leverage Hi-C results for the interpretation of GWAS variants. BMC Research Notes. 9(1): 159. *Co-corresponding author.
Xu Z, Zhang G, Jin F, Chen M, Furey TS, Sullivan PF, Qin ZS, Hu M* and Li Y*. (2016) A hidden Markov random field based Bayesian method for the detection of long-range chromosomal interactions in Hi-C data. Bioinformatics, 32(5): 650-656. *Co-corresponding author.
Hu M, Deng K, Qin ZS and Liu JS. (2013) Understanding spatial organizations of chromosomes via statistical analysis of Hi-C data. Quantitative Biology, 1(2): 156-174. Featured cover image for this issue of Quantitative Biology. Selected as one of the two featured articles for this issue in Quantitative Biology.
Hu M, Deng K, Qin ZS, Dixon J, Selvaraj S, Fang J, Ren B and Liu JS. (2013) Bayesian inference of spatial organizations of chromosomes. PLoS Computational Biology, 9(1): e1002893.
Hu M, Deng K, Selvaraj S, Qin ZS, Ren B and Liu JS. (2012) HiCNorm: removing biases in Hi-C data via Poisson regression. Bioinformatics, 28(23): 3131-3133.
Hu M, Zhu Y, Taylor JMG, Liu JS and Qin ZS. (2012) Using Poisson mixed-effects model to quantify transcript-level gene expression in RNA-Seq. Bioinformatics, 28(1):63-68.
Dixon JR, Selvaraj S, Yue F, Kim A, Li Y, Shen Y, Hu M, Liu JS and Ren B. (2012) Topological domains in mammalian genomes identified by analysis of chromatin interactions. Nature, 485, 376-380.
Hu M, Yu J, Taylor JMG, Chinnaiyan AM and Qin ZS. (2010) On the detection and refinement of transcription factor binding sites using ChIP-Seq data. Nucleic Acids Research, 38(7), 2154-2167.
Hu M and Qin ZS. (2009) Query large scale microarray compendium datasets using a model-based Bayesian approach with variable selection. PLoS One, 4(2): e4495.